PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_B6ADF4159.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 800aa    MW: 90515.7 Da    PI: 9.3903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_B6ADF4159.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.64e-10475515346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT eE e++ + v++ G++ Wkt a+++g  +++ ++k+ w+ 
  Traes_7AS_B6ADF4159.1 475 KWTDEEKEQIRRFVEKNGTD-WKTLAQELG--KSEIHVKHAWRR 515
                            8*******************.********8..9*******9986 PP

2Myb_DNA-binding27.66.6e-09615655346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT +E e++ + v+  G++ Wkt ar++g  +++ ++k+ w+ 
  Traes_7AS_B6ADF4159.1 615 KWTDDEKEQIRRFVESNGTD-WKTLARELG--KSEIHVKDTWRR 655
                            8*******************.********8..9*******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.273395468IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5398470IPR009057Homeodomain-like
SMARTSM007170.016399470IPR001005SANT/Myb domain
SuperFamilySSF466896.53E-9448522IPR009057Homeodomain-like
PROSITE profilePS5129411.773468521IPR017930Myb domain
SMARTSM007175.4E-5472519IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-6475529IPR009057Homeodomain-like
CDDcd001670.00112475517No hitNo description
PfamPF139213.2E-8476528No hitNo description
Gene3DG3DSA:1.10.10.601.0E-4539609IPR009057Homeodomain-like
SMARTSM007170.089539610IPR001005SANT/Myb domain
PROSITE profilePS500905.401542608IPR017877Myb-like domain
PROSITE profilePS512948.878610661IPR017930Myb domain
SMARTSM007178.8E-4612659IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-8614674IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-8615667IPR009057Homeodomain-like
PfamPF139212.1E-8616674No hitNo description
PROSITE profilePS500908.014658726IPR017877Myb-like domain
SMARTSM007170.0017662728IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-8668727IPR009057Homeodomain-like
SuperFamilySSF466891.17E-7706788IPR009057Homeodomain-like
PROSITE profilePS500907.886728781IPR017877Myb-like domain
SMARTSM007173.5732783IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MDEERVEREG RRLKKKAKHR DEEGKAKDKL KRRTDEKATE ADSVAEKVKE EAVVGAAEEK  60
EGHKRKKGKG RSEETKSKEN VPVVSGSIEN GVGEEQAKKS GSMAPCSEGA MNKDNVKKDK  120
KRRKEEKKKE KEADMTEQKQ SFDTTVGKEQ AETSGLMEVT PCLELAQGDM SKDKVKKVKK  180
KKKEEKEAEK TGQQKQTFDT TVGNSGAKYA EGDKVEGKQS SKAKKSKRKS DDGAPAADQI  240
VTREYKKKKK EHSVVLEESS QTENSNEGEN REIKKGGKER SKASPDFSEN ASAGGEEAGV  300
DGNDDKKKKK SKGIGGGKKE KEKSVRSTKG KQVSFADSAE MFRTEGGDGE GIGGGKQKEK  360
AALSKKKGKR VSFANSAEVF SIEGGDNEED GISNESKSVH GRFTPEEDAA LMEAMRGYAE  420
MKQLGEKGLE MIGSCRKYPE LKGCWDDIAK SLPHRPYLAI YRRAHTLLHR STGCKWTDEE  480
KEQIRRFVEK NGTDWKTLAQ ELGKSEIHVK HAWRRIKPKK KKGADDEEDV SGGESELVHG  540
HRFTTEEDAI LMEAMRDYAE LKQLGEKGLE MIGSCSKYPE LKGCWDDIAK SLPHRPHEAI  600
YHRARILLYR SAERKWTDDE KEQIRRFVES NGTDWKTLAR ELGKSEIHVK DTWRRIKPKN  660
LKKGRWTQDE HQNLFDLVNL DLRLKAHQIK NPDHRLLRDN ISWEAISDKL TTRNHKNCCL  720
KWYETLASPM VKEGVWADVD DYLLVEALQK VDAVCIEDVD WDSLLDHRSG EVCRQRWNQM  780
VRAFHRTSGS AVEALLPRND
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732DKLKRR
2119123KKRRK
3226248KRKSDDGAPAADQIVTREYKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3630030.0AK363003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227387.11e-144PREDICTED: RNA polymerase I termination factor-like
TrEMBLW5HHP10.0W5HHP1_WHEAT; Uncharacterized protein
STRINGBRADI1G33410.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.16e-87MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]